akutz

Sounds like those are non-standard Mail.app add-ons that are not part of the com.apple.mail.plist file where the preferences are stored. Add their pref files to the list of backed up files in the workflow.

Per the issue with Mail.app being slow on Mountain Lion due to sandboxing, I created a workflow that nukes the sandbox on launch, but saves your preferences. This keeps Mail nice and speedy and doesn't lose your saved settings. The workflow is available here.

This workflow enables you to start, stop, and get the status of an OpenConnect VPN. Here is the controller's gist and the workflow. You'll also need to add the following three lines to your sudoers file via visudo:

Cmnd_Alias OPENCONNECT = /usr/local/bin/openconnect --passwd-on-stdin --config=* * &> /usr/local/var/log/openconnect.log

%admin  ALL=(ALL) NOPASSWD: OPENCONNECT
%admin  ALL=(ALL) NOPASSWD: /usr/bin/killall -HUP openconnect