Hi,
Alfred v2.1.1 (227), OS X 10.9.1
Recreate: always
Steps:
1. Open Alfred Preferences,
2. Features Tab, Terminal / Shell feature
3. Select Application, custom
4. Paste in custom applescript (mine is https://gist.github.com/itsthejb/8900078)
5. Close preferences window
6. Use action - works
Expected:
Open Alfred preferences, features, terminal / shell, apple script is still set in custom
Actual:
Reverts to Appliction: Terminal (script doesn't persist)
Note:
The action seems to work at first, but is eventually lost, especially between boots