likwid

David, thanks.  In researching my reply to you, I found that there is a specific command in brew cask that will modify the Alfred search scope to include the Caskroom.  Does this mean that Alfred doesn't index symlinks?

I recently purchased a new MacBook Pro, with Mavericks. I am using brew cask to install most of my applications, and it installs them into ~/Applications.  I added this to my Alfred configuration, and I have reset my index a few times, but Alfred just refuses to index anything in ~/Applications. 

I have tried repairing file permissions, re-indexing, deleting application cache, etc...  The only thing I haven't tried is a full uninstall and reinstall.

Has anyone else experienced problems with Alfred 2 and Mavericks?